PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g06840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 416aa    MW: 46607.8 Da    PI: 7.5317
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g06840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-1772123256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g+
  Vradi08g06840.1  72 SYIGVRKRP-WGKFAAEIRDTTRNG--SRVWLGTFDSAEAAALAYDQAAFSMRGH 123
                      599******.**********54465..**************************97 PP

2AP254.43.2e-17279329356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      y GVr ++ +g+++AeIrd +    + kr++lg+f +ae Aa a+++a+ +++g+
  Vradi08g06840.1 279 YIGVRKRP-WGKFAAEIRDTTR---SgKRVWLGTFESAEAAALAYDQAAFSMRGH 329
                      89******.**********322...35**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-1771131No hitNo description
SMARTSM003801.3E-3572136IPR001471AP2/ERF domain
PfamPF008477.8E-1372123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-2972131IPR001471AP2/ERF domain
PROSITE profilePS5103222.28672130IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2172131IPR016177DNA-binding domain
PRINTSPR003671.5E-87384IPR001471AP2/ERF domain
PRINTSPR003671.5E-896112IPR001471AP2/ERF domain
SMARTSM003804.0E-34278342IPR001471AP2/ERF domain
PfamPF008479.5E-13278329IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-29278337IPR001471AP2/ERF domain
PROSITE profilePS5103222.379278336IPR001471AP2/ERF domain
CDDcd000185.23E-17279337No hitNo description
SuperFamilySSF541713.27E-21279337IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MTSPFFQNPS DWDMLQEPSE ILFESLSSNN AVLDPIQDSL SFDMVDFSTA PAQGNHNQLV  60
VKCEKVQNKE KSYIGVRKRP WGKFAAEIRD TTRNGSRVWL GTFDSAEAAA LAYDQAAFSM  120
RGHNAVLNFP VKTVKESLQE IQYSFSNGSS PALALKERNF IQRKLSSRAR KYKGKETSEA  180
ATPSVVVLED LGVDYLEQLL SITMSSPFFQ SPYWDMIMQM QEPSEILFQP LSSNDVLDPL  240
HDSLSFDMVD FSTAPAEGNH KEAKKLVVES EVKNRDRSYI GVRKRPWGKF AAEIRDTTRS  300
GKRVWLGTFE SAEAAALAYD QAAFSMRGHN AVLNFPVKRV KESLQEIQYT CFNGTSPALA  360
LKARHCKKKH FSKAKECKGK EKSKPCVVVL EDLGVDYLEQ LLSISDQSAS PTYFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2669338265ATERF1
3gcc_A4e-2669338265ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511603.11e-148PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC82e-49ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0S3SR871e-135A0A0S3SR87_PHAAN; Uncharacterized protein
STRINGGLYMA13G18350.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-41ethylene response factor 1